DNA Knot Malleability in Single-Digit Nanopores

نویسندگان

چکیده

Knots in long DNA molecules are prevalent biological systems and serve as a model system for investigating static dynamic properties of biopolymers. We explore the dynamics knots double-stranded new regime nanometer-scale confinement, large forces, short time scales, using solid-state nanopores. show that undergo isomorphic translocation through nanopore, retaining their equilibrium morphology by swiftly compressing lateral direction to fit constriction. observe no evidence knot tightening or jamming, even single-digit explain observations malleability DNA, characterized sharp buckling nanopores, driven transient disruption base pairing. Our molecular simulations support model. These results relevant not only understanding packing manipulation living cells but also polymer physics development nanopore-based sequencing technologies.

برای دانلود باید عضویت طلایی داشته باشید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

DNA detection with single asymmetric nanopores in polyimide

The concept is easy to understand: A membrane with a single pore of appropriate size (diameter comparable to that of the molecule to detect) separates the two halves of an electrochemical cell. The cell is filled with an electrolyte, and a voltage is applied across the membrane. In the absence of any biomolecules in the solution, a steady flow of ions is measured as a constant current. As soon ...

متن کامل

Behavior of single DNA molecules in the well-ordered nanopores.

Here we describe a simple approach to fabricate robust three-dimensional periodic porous nanostructures inside the microchannels. In this approach, the colloidal crystals were first grown inside the microchannel using an evaporation-assisted self-assembly process. Then the void spaces among the colloidal crystals were filled with epoxy-based negative tone photoresist. After subsequent developme...

متن کامل

DNA translocation through single-layer boron nitride nanopores.

Ultra-thin nanopores have become promising biological sensors because of their outstanding signal-to-noise ratio and spatial resolution. Here, we show that boron nitride (BN), which is a new two-dimensional (2D) material similar to graphene, could be utilized for making a nanopore with an atomic thickness. Using an all-atom molecular dynamics simulation, we investigated the dynamics of DNA tran...

متن کامل

Gating of Single Synthetic Nanopores by DNA Molecular Switching

Switchable ion channels that are made of membrane proteins play crucial role in cellular circuits. Thereby synthetic nanofluidic channels attract great interest owing to the novel ion transport properties that are helpful for understanding the biological ion channels and for the promising applications on ultrasensitive molecular detection and separation [1]. Here we report a synthetic nanopore-...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: Nano Letters

سال: 2021

ISSN: ['1530-6992', '1530-6984']

DOI: https://doi.org/10.1021/acs.nanolett.0c05142